Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4880 domain-containing protein | D5071_11295 | Not Available | Positive | 2461500 - 2462447 | 35344.8 |
| ai-2e family transporter | D5071_11300 | Not Available | Positive | 2462619 - 2463629 | 37263.5 |
| mfs transporter | D5071_11305 | Not Available | Negative | 2463724 - 2465250 | 56449.4 |
| hypothetical protein | D5071_11310 | Not Available | Positive | 2465635 - 2466009 | 13427.2 |
| fructuronate reductase | D5071_11315 | Not Available | Negative | 2466002 - 2467489 | 54751.8 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | D5071_11320 | Not Available | Positive | 2467811 - 2469091 | 45527.3 |
| l,d-transpeptidase | D5071_11325 | Not Available | Negative | 2469153 - 2470220 | 38239.6 |
| deaminated glutathione amidase | D5071_11330 | Not Available | Negative | 2470405 - 2471202 | 28989.2 |
| cytochrome b561 | D5071_11335 | Not Available | Negative | 2471224 - 2471760 | 19971.0 |
| pyruvate:ferredoxin (flavodoxin) oxidoreductase | D5071_11340 | Not Available | Negative | 2472004 - 2475537 | 129550.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
