Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yaii/yqxd family protein | D5071_11190 | Not Available | Positive | 2437302 - 2437754 | 16824.1 |
| tryptophan permease | D5071_11195 | Not Available | Negative | 2437822 - 2439096 | 46041.3 |
| hypothetical protein | D5071_11200 | Not Available | Negative | 2439322 - 2439645 | 12141.6 |
| hypothetical protein | D5071_11205 | Not Available | Negative | 2439665 - 2440099 | 16665.1 |
| nadp-dependent oxaloacetate-decarboxylating malate dehydrogenase | D5071_11210 | Not Available | Negative | 2440447 - 2442726 | 82139.9 |
| sugar-binding transcriptional regulator | D5071_11215 | Not Available | Negative | 2442981 - 2443946 | 35245.0 |
| triose-phosphate isomerase | D5071_11220 | Not Available | Negative | 2443977 - 2444774 | 29051.7 |
| 4-hydroxythreonine-4-phosphate dehydrogenase pdxa | D5071_11225 | Not Available | Positive | 2445019 - 2446023 | 36479.1 |
| four-carbon acid sugar kinase family protein | D5071_11230 | Not Available | Positive | 2446057 - 2447778 | 62082.2 |
| 2-keto-3-deoxygluconate permease | D5071_11235 | Not Available | Positive | 2447880 - 2448905 | 35491.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
