Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s-methyl-5-thioribose kinase | D5071_00525 | Not Available | Positive | 99465 - 100667 | 44175.4 |
| hnh nuclease family protein | D5071_00530 | Not Available | Negative | 100733 - 101083 | 13336.6 |
| acyl-coa dehydrogenase | D5071_00535 | Not Available | Negative | 101181 - 103628 | 89132.2 |
| d-sedoheptulose 7-phosphate isomerase | D5071_00540 | Not Available | Positive | 103979 - 104560 | 20790.8 |
| class ii glutamine amidotransferase | D5071_00545 | Not Available | Positive | 104792 - 105559 | 28937.6 |
| transpeptidase | D5071_00550 | Not Available | Negative | 105530 - 106264 | 27888.5 |
| class i sam-dependent methyltransferase | D5071_00555 | Not Available | Negative | 106521 - 107294 | 28643.0 |
| xre family transcriptional regulator | D5071_00560 | Not Available | Positive | 107524 - 108324 | 29926.7 |
| dna polymerase iv | D5071_00565 | Not Available | Positive | 108400 - 109458 | 40275.7 |
| beta-ala-his dipeptidase | D5071_00570 | Not Available | Negative | 109526 - 110986 | 52629.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
