Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fmn-binding protein | D5071_10990 | Not Available | Positive | 2391115 - 2391462 | 11724.9 |
| fad-dependent oxidoreductase | D5071_10995 | Not Available | Positive | 2391530 - 2393059 | 55031.1 |
| dna oxidative demethylase alkb | D5071_11000 | Not Available | Negative | 2393136 - 2393792 | 23763.4 |
| bifunctional dna-binding transcriptional regulator/o6-methylguanine-dna methyltransferase ada | D5071_11005 | Not Available | Negative | 2393789 - 2394904 | 40246.0 |
| translation factor (sua5) | D5071_11010 | Not Available | Positive | 2395146 - 2395925 | 28808.5 |
| dna-3-methyladenine glycosylase 2 family protein | D5071_11015 | Not Available | Positive | 2396106 - 2396768 | 24973.1 |
| multidrug/biocide efflux pace transporter | D5071_11020 | Not Available | Negative | 2396778 - 2397248 | 18105.6 |
| lysr family transcriptional regulator | D5071_11025 | Not Available | Positive | 2397513 - 2398391 | 32596.1 |
| hypothetical protein | D5071_11030 | Not Available | Negative | 2398646 - 2398831 | 7036.55 |
| fumarate hydratase | D5071_11035 | Not Available | Positive | 2399008 - 2400651 | 59784.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
