Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytosine permease | D5071_10885 | Not Available | Positive | 2365649 - 2366965 | 46561.5 |
| avirulence protein | D5071_10890 | Not Available | Positive | 2367270 - 2369135 | 68451.5 |
| stress response protein azuc | D5071_10895 | Not Available | Negative | 2369260 - 2369346 | 3292.18 |
| mfs transporter | D5071_10900 | Not Available | Positive | 2369739 - 2370932 | 42818.1 |
| biopolymer transporter exbd | D5071_10905 | Not Available | Positive | 2371221 - 2371625 | 14881.4 |
| energy transducer tonb | D5071_10910 | Not Available | Positive | 2371627 - 2372367 | 27095.2 |
| tonb-dependent receptor | D5071_10915 | Not Available | Positive | 2372458 - 2374698 | 82725.8 |
| mota/tolq/exbb proton channel family protein | D5071_10920 | Not Available | Positive | 2374784 - 2375467 | 24770.6 |
| phospholipase | D5071_10925 | Not Available | Positive | 2375460 - 2376806 | 49703.6 |
| hypothetical protein | D5071_10930 | Not Available | Negative | 2376975 - 2377799 | 31699.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
