Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| murein hydrolase activator nlpd | D5071_10735 | Not Available | Negative | 2330621 - 2331655 | 35563.6 |
| protein-l-isoaspartate(d-aspartate) o-methyltransferase | D5071_10740 | Not Available | Negative | 2332127 - 2332753 | 23252.2 |
| trna pseudouridine(13) synthase trud | D5071_10745 | Not Available | Negative | 2332893 - 2333939 | 39128.4 |
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | D5071_10750 | Not Available | Negative | 2334030 - 2334527 | 17564.2 |
| 2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase | D5071_10755 | Not Available | Negative | 2334581 - 2335294 | 25792.8 |
| cell division protein ftsb | D5071_10760 | Not Available | Negative | 2335298 - 2335633 | 12555.8 |
| basic amino acid abc transporter substrate-binding protein | D5071_10765 | Not Available | Positive | 2335965 - 2336750 | 28520.1 |
| amino acid abc transporter permease | D5071_10770 | Not Available | Positive | 2336884 - 2337648 | 28421.1 |
| amino acid abc transporter atp-binding protein | D5071_10775 | Not Available | Positive | 2337635 - 2338357 | 26344.3 |
| duf3561 family protein | D5071_10780 | Not Available | Negative | 2338411 - 2338758 | 13169.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
