Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cyclase family protein | D5071_10585 | Not Available | Negative | 2300494 - 2301240 | 27671.3 |
| dna helicase ii | D5071_10590 | Not Available | Negative | 2301385 - 2303547 | 81776.3 |
| 5-amino-6-(5-phospho-d-ribitylamino)uracil phosphatase yigb | D5071_10595 | Not Available | Negative | 2303628 - 2304344 | 26990.0 |
| tyrosine recombinase xerc | D5071_10600 | Not Available | Negative | 2304344 - 2305279 | 34686.8 |
| duf484 domain-containing protein | D5071_10605 | Not Available | Negative | 2305276 - 2305980 | 26649.4 |
| diaminopimelate epimerase | D5071_10610 | Not Available | Negative | 2305977 - 2306801 | 30146.1 |
| hypothetical protein | D5071_10615 | Not Available | Negative | 2306879 - 2307064 | 6579.14 |
| iron donor protein cyay | D5071_10620 | Not Available | Positive | 2307124 - 2307444 | 11955.8 |
| hypothetical protein | D5071_10625 | Not Available | Negative | 2307479 - 2308012 | 19003.4 |
| class i adenylate cyclase | D5071_10630 | Not Available | Negative | 2308058 - 2310616 | 97682.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
