Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alanine--glyoxylate aminotransferase family protein | D5071_00475 | Not Available | Positive | 87669 - 88913 | 45719.1 |
| allantoate amidohydrolase | D5071_00480 | Not Available | Positive | 88910 - 90193 | 45896.9 |
| hypothetical protein | D5071_00485 | Not Available | Negative | 90351 - 92429 | 77203.9 |
| amidohydrolase | D5071_00490 | Not Available | Negative | 92675 - 93442 | 28837.1 |
| pyridoxal phosphate-dependent aminotransferase | D5071_00495 | Not Available | Negative | 93430 - 94587 | 42751.9 |
| methylthioribulose 1-phosphate dehydratase | D5071_00500 | Not Available | Positive | 94768 - 95385 | 22658.1 |
| acireductone synthase | D5071_00505 | Not Available | Positive | 95382 - 96071 | 25760.1 |
| acireductone dioxygenase | D5071_00510 | Not Available | Positive | 96068 - 96613 | 20676.2 |
| hypothetical protein | D5071_00515 | Not Available | Negative | 97033 - 97347 | 11929.2 |
| s-methyl-5-thioribose-1-phosphate isomerase | D5071_00520 | Not Available | Negative | 98318 - 99346 | 36657.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
