Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| citrate synthase | D5071_10275 | Not Available | Negative | 2225734 - 2227020 | 47782.6 |
| rna-binding transcriptional accessory protein | D5071_10280 | Not Available | Positive | 2227352 - 2229673 | 84885.4 |
| iclr family transcriptional regulator | D5071_10285 | Not Available | Positive | 2229896 - 2230684 | 29544.0 |
| 2-keto-3-deoxygluconate transporter | D5071_10290 | Not Available | Positive | 2231038 - 2231994 | 32611.9 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | D5071_10295 | Not Available | Positive | 2232007 - 2232843 | 31414.7 |
| carbapenem biosynthesis protein cpmh | D5071_10300 | Not Available | Negative | 2232933 - 2233487 | 20925.8 |
| cpmj protein | D5071_10305 | Not Available | Negative | 2233484 - 2234017 | 20013.7 |
| formylglycine-generating enzyme family protein | D5071_10310 | Not Available | Negative | 2234007 - 2234900 | 32613.4 |
| ftsx-like permease family protein | D5071_10315 | Not Available | Negative | 2235118 - 2236551 | 51110.0 |
| abc transporter atp-binding protein | D5071_10320 | Not Available | Negative | 2236548 - 2237240 | 25321.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
