Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oxalurate catabolism protein hpxz | D5071_00425 | Not Available | Negative | 79258 - 79641 | 14320.0 |
| hypothetical protein | D5071_00430 | Not Available | Negative | 79651 - 79830 | 6544.12 |
| atze family amidohydrolase | D5071_00435 | Not Available | Negative | 79787 - 81247 | 51884.5 |
| oxalurate catabolism protein hpxx | D5071_00440 | Not Available | Negative | 81244 - 81441 | 7489.01 |
| gamma-glutamyltransferase family protein | D5071_00445 | Not Available | Negative | 81468 - 83072 | 56933.7 |
| murr/rpir family transcriptional regulator | D5071_00450 | Not Available | Positive | 83272 - 84111 | 31988.9 |
| amino acid abc transporter substrate-binding protein | D5071_00455 | Not Available | Positive | 84714 - 85520 | 28921.3 |
| amino acid abc transporter permease | D5071_00460 | Not Available | Positive | 85533 - 86198 | 24422.8 |
| amino acid abc transporter permease | D5071_00465 | Not Available | Positive | 86198 - 86851 | 24303.2 |
| amino acid abc transporter atp-binding protein | D5071_00470 | Not Available | Positive | 86832 - 87575 | 27232.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
