Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac family transcriptional regulator | D5071_10025 | Not Available | Positive | 2167328 - 2168095 | 29214.2 |
| hypothetical protein | D5071_10030 | Not Available | Positive | 2168098 - 2168280 | 6794.2 |
| drug:proton antiporter | D5071_10035 | Not Available | Negative | 2168422 - 2168790 | 14098.7 |
| yafy family transcriptional regulator | D5071_10040 | Not Available | Negative | 2168888 - 2169577 | 26475.2 |
| carbamoyl-phosphate synthase large subunit | D5071_10045 | Not Available | Negative | 2169737 - 2172961 | 117865.0 |
| carbamoyl-phosphate synthase small subunit | D5071_10050 | Not Available | Negative | 2172976 - 2174124 | 41537.4 |
| 4-hydroxy-tetrahydrodipicolinate reductase | D5071_10055 | Not Available | Negative | 2174571 - 2175392 | 28868.7 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | D5071_10060 | Not Available | Negative | 2175859 - 2176809 | 34722.4 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | D5071_10065 | Not Available | Negative | 2176790 - 2177263 | 17041.1 |
| lipoprotein signal peptidase | D5071_10070 | Not Available | Negative | 2177263 - 2177778 | 19085.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
