Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase ii | D5071_09870 | Not Available | Positive | 2134862 - 2137228 | 90405.2 |
| rna polymerase-associated protein rapa | D5071_09875 | Not Available | Positive | 2137391 - 2140294 | 109754.0 |
| bifunctional trna pseudouridine(32) synthase/23s rrna pseudouridine(746) synthase rlua | D5071_09880 | Not Available | Positive | 2140463 - 2141116 | 24555.6 |
| co-chaperone djla | D5071_09885 | Not Available | Negative | 2141200 - 2142090 | 33582.7 |
| lps assembly protein lptd | D5071_09890 | Not Available | Positive | 2142276 - 2144639 | 89461.9 |
| peptidylprolyl isomerase sura | D5071_09895 | Not Available | Positive | 2144736 - 2146031 | 47571.7 |
| 4-hydroxythreonine-4-phosphate dehydrogenase pdxa | D5071_09900 | Not Available | Positive | 2146047 - 2147048 | 35477.0 |
| 16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsma | D5071_09905 | Not Available | Positive | 2147041 - 2147859 | 30636.1 |
| co2+/mg2+ efflux protein apag | D5071_09910 | Not Available | Positive | 2147872 - 2148249 | 14038.7 |
| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) | D5071_09915 | Not Available | Positive | 2148252 - 2149109 | 31756.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
