Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiamine abc transporter substrate binding subunit | D5071_09820 | Not Available | Positive | 2124270 - 2125286 | 37660.9 |
| thiamine/thiamine pyrophosphate abc transporter permease thip | D5071_09825 | Not Available | Positive | 2125262 - 2126869 | 59545.8 |
| thiamine abc transporter atp-binding protein thiq | D5071_09830 | Not Available | Positive | 2126856 - 2127566 | 26037.6 |
| xylan 1,4-beta-xylosidase | D5071_09835 | Not Available | Negative | 2127571 - 2129193 | 60239.2 |
| hypothetical protein | D5071_09840 | Not Available | Negative | 2129224 - 2129430 | 7847.68 |
| ilvb operon leader peptide ivbl | D5071_09845 | Not Available | Positive | 2129670 - 2129780 | 3609.4 |
| acetolactate synthase large subunit | D5071_09850 | Not Available | Positive | 2129876 - 2131555 | 59775.3 |
| acetolactate synthase isozyme 1 small subunit | D5071_09855 | Not Available | Positive | 2131561 - 2131872 | 11806.3 |
| deda family protein | D5071_09860 | Not Available | Negative | 2131908 - 2132678 | 28629.3 |
| ggdef domain-containing protein | D5071_09865 | Not Available | Positive | 2133039 - 2134619 | 59507.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
