Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-isopropylmalate synthase | D5071_09765 | Not Available | Positive | 2112538 - 2114136 | 58711.6 |
| 3-isopropylmalate dehydrogenase | D5071_09770 | Not Available | Positive | 2114136 - 2115227 | 39261.0 |
| 3-isopropylmalate dehydratase large subunit | D5071_09775 | Not Available | Positive | 2115230 - 2116630 | 49882.8 |
| 3-isopropylmalate dehydratase small subunit | D5071_09780 | Not Available | Positive | 2116644 - 2117246 | 22458.4 |
| azld domain-containing protein | D5071_09785 | Not Available | Negative | 2117314 - 2117625 | 11449.8 |
| branched-chain amino acid abc transporter permease | D5071_09790 | Not Available | Negative | 2117622 - 2118356 | 26495.0 |
| arac family transcriptional regulator | D5071_09795 | Not Available | Negative | 2118460 - 2119296 | 31629.2 |
| hamp domain-containing protein | D5071_09800 | Not Available | Negative | 2119508 - 2121127 | 58190.2 |
| glucose uptake inhibitor sgrt | D5071_09810 | Not Available | Negative | 2122175 - 2122339 | 6770.1 |
| hth-type transcriptional regulator sgrr | D5071_09815 | Not Available | Positive | 2122430 - 2124088 | 64586.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
