Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iv pilin biogenesis protein | D5071_09615 | Not Available | Positive | 2078344 - 2079549 | 45048.8 |
| gmp reductase | D5071_09620 | Not Available | Negative | 2079657 - 2080697 | 37171.9 |
| dephospho-coa kinase | D5071_09625 | Not Available | Positive | 2080991 - 2081617 | 22926.3 |
| cell division protein zapd | D5071_09630 | Not Available | Positive | 2081610 - 2082362 | 28846.0 |
| dna gyrase inhibitor yacg | D5071_09635 | Not Available | Positive | 2082436 - 2082630 | 7473.72 |
| 8-oxo-dgtp diphosphatase mutt | D5071_09640 | Not Available | Negative | 2082695 - 2083090 | 14989.7 |
| preprotein translocase subunit seca | D5071_09645 | Not Available | Negative | 2083180 - 2085882 | 102326.0 |
| seca regulator secm | D5071_09650 | Not Available | Negative | 2085995 - 2086519 | 19497.3 |
| duf721 domain-containing protein | D5071_09655 | Not Available | Positive | 2086537 - 2087064 | 19500.7 |
| udp-3-o-acyl-n-acetylglucosamine deacetylase | D5071_09660 | Not Available | Negative | 2087083 - 2088000 | 33960.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
