Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gdp-l-fucose synthase | D5071_09115 | Not Available | Negative | 1967808 - 1968770 | 36251.5 |
| gdp-mannose 4,6-dehydratase | D5071_09120 | Not Available | Negative | 1968773 - 1969897 | 42253.4 |
| glycosyltransferase family 1 protein | D5071_09125 | Not Available | Negative | 1969936 - 1970931 | 37346.4 |
| oligosaccharide repeat unit polymerase | D5071_09130 | Not Available | Negative | 1970936 - 1972168 | 47976.7 |
| glycosyltransferase | D5071_09135 | Not Available | Negative | 1972168 - 1972929 | 28767.3 |
| glycosyltransferase | D5071_09140 | Not Available | Negative | 1972916 - 1974172 | 47112.2 |
| radical sam protein | D5071_09145 | Not Available | Negative | 1974169 - 1976559 | 90995.6 |
| flippase | D5071_09150 | Not Available | Negative | 1976526 - 1977800 | 47889.8 |
| tyrosine-protein kinase wzc | D5071_09155 | Not Available | Negative | 1977898 - 1980069 | 79538.0 |
| protein tyrosine phosphatase | D5071_09160 | Not Available | Negative | 1980085 - 1980519 | 15952.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
