Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | D5071_08965 | Not Available | Negative | 1934231 - 1935262 | 36645.7 |
| sugar abc transporter atp-binding protein | D5071_08970 | Not Available | Negative | 1935275 - 1936822 | 56429.2 |
| sugar abc transporter substrate-binding protein | D5071_08975 | Not Available | Negative | 1936895 - 1937833 | 33040.4 |
| inositol 2-dehydrogenase | D5071_08980 | Not Available | Negative | 1937908 - 1938894 | 35876.7 |
| hypothetical protein | D5071_08985 | Not Available | Positive | 1939340 - 1939621 | 10655.0 |
| 3d-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) | D5071_08990 | Not Available | Negative | 1939652 - 1941583 | 70424.0 |
| coa-acylating methylmalonate-semialdehyde dehydrogenase | D5071_08995 | Not Available | Negative | 1941940 - 1943451 | 54183.1 |
| murr/rpir family transcriptional regulator | D5071_09000 | Not Available | Positive | 1943779 - 1944636 | 31709.8 |
| antibiotic biosynthesis monooxygenase | D5071_09005 | Not Available | Positive | 1944685 - 1944990 | 11825.4 |
| extracellular solute-binding protein | D5071_09010 | Not Available | Positive | 1945317 - 1946420 | 41096.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
