Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pts glucose transporter subunit iibc | D5071_08865 | Not Available | Negative | 1912793 - 1914373 | 56827.6 |
| nucleoside-diphosphate kinase | D5071_08870 | Not Available | Positive | 1914732 - 1915160 | 15509.4 |
| bifunctional trna (adenosine(37)-c2)-methyltransferase trmg/ribosomal rna large subunit methyltransferase rlmn | D5071_08875 | Not Available | Positive | 1915492 - 1916658 | 43297.4 |
| type iv pilus biogenesis/stability protein pilw | D5071_08880 | Not Available | Positive | 1916889 - 1917644 | 27687.7 |
| cytoskeleton protein rodz | D5071_08885 | Not Available | Positive | 1917634 - 1918644 | 35665.2 |
| flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase | D5071_08890 | Not Available | Positive | 1918685 - 1919806 | 40791.2 |
| histidine--trna ligase | D5071_08895 | Not Available | Positive | 1919944 - 1921218 | 47357.7 |
| hypothetical protein | D5071_08900 | Not Available | Positive | 1921232 - 1921852 | 22410.3 |
| outer membrane protein assembly factor bamb | D5071_08905 | Not Available | Positive | 1921863 - 1923044 | 42601.3 |
| ribosome biogenesis gtpase der | D5071_08910 | Not Available | Positive | 1923187 - 1924674 | 55175.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
