Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubig | D5071_08660 | Not Available | Negative | 1867290 - 1868009 | 26708.2 |
| dna topoisomerase (atp-hydrolyzing) subunit a | D5071_08665 | Not Available | Positive | 1868294 - 1870933 | 97655.8 |
| two-component system sensor histidine kinase rcsc | D5071_08670 | Not Available | Positive | 1871049 - 1873904 | 106868.0 |
| transcriptional regulator rcsb | D5071_08675 | Not Available | Negative | 1873942 - 1874592 | 23484.7 |
| phosphotransferase rcsd | D5071_08680 | Not Available | Negative | 1874601 - 1877285 | 101663.0 |
| mfs transporter | D5071_08685 | Not Available | Negative | 1877302 - 1878471 | 40213.8 |
| isochorismate synthase menf | D5071_08690 | Not Available | Positive | 1878814 - 1880136 | 49271.5 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase | D5071_08695 | Not Available | Positive | 1880426 - 1882108 | 60942.8 |
| 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase | D5071_08700 | Not Available | Positive | 1882096 - 1882896 | 29287.1 |
| 1,4-dihydroxy-2-naphthoyl-coa synthase | D5071_08705 | Not Available | Positive | 1882902 - 1883759 | 31468.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
