Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf997 family protein | D5071_08460 | Not Available | Negative | 1819292 - 1819534 | 9226.35 |
| 2-isopropylmalate synthase | D5071_08465 | Not Available | Positive | 1819865 - 1821535 | 62258.4 |
| arac family transcriptional regulator | D5071_08470 | Not Available | Negative | 1821525 - 1822286 | 28728.9 |
| acetyl-coa carboxylase biotin carboxylase subunit | D5071_08475 | Not Available | Negative | 1822434 - 1823777 | 49371.7 |
| acetyl-coa carboxylase biotin carboxyl carrier protein | D5071_08480 | Not Available | Negative | 1823789 - 1824256 | 16543.2 |
| type ii 3-dehydroquinate dehydratase | D5071_08485 | Not Available | Negative | 1824281 - 1824733 | 16524.7 |
| sulfoxide reductase heme-binding subunit yedz | D5071_08490 | Not Available | Negative | 1824988 - 1825587 | 23101.6 |
| protein-methionine-sulfoxide reductase catalytic subunit msrp | D5071_08495 | Not Available | Negative | 1825646 - 1826647 | 37453.9 |
| oxidoreductase | D5071_08500 | Not Available | Negative | 1827027 - 1828004 | 34395.3 |
| rnase e specificity factor csrd | D5071_08505 | Not Available | Positive | 1828183 - 1830120 | 72746.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
