Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate/glutamate racemase family protein | D5071_07640 | Not Available | Positive | 1622033 - 1622737 | 25937.3 |
| arsc family reductase | D5071_07645 | Not Available | Positive | 1623327 - 1623704 | 14481.2 |
| succinyl-diaminopimelate desuccinylase | D5071_07650 | Not Available | Positive | 1623706 - 1624833 | 41065.0 |
| d-alanyl-d-alanine carboxypeptidase family protein | D5071_07655 | Not Available | Positive | 1624830 - 1625504 | 25674.0 |
| ypfn family protein | D5071_07660 | Not Available | Positive | 1625507 - 1625701 | 7794.46 |
| hamp domain-containing protein | D5071_07665 | Not Available | Negative | 1625789 - 1627459 | 59494.8 |
| esterase | D5071_07670 | Not Available | Negative | 1627847 - 1628464 | 22093.5 |
| duf1272 domain-containing protein | D5071_07675 | Not Available | Negative | 1628664 - 1628891 | 8283.94 |
| autotransporter domain-containing protein | D5071_07680 | Not Available | Positive | 1629252 - 1632179 | 103595.0 |
| hypothetical protein | D5071_07685 | Not Available | Positive | 1632455 - 1632649 | 7189.59 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
