Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| penicillin-binding protein 2 | D5071_07590 | Not Available | Positive | 1612417 - 1614321 | 71449.1 |
| rod shape-determining protein roda | D5071_07595 | Not Available | Positive | 1614331 - 1615443 | 40642.8 |
| endolytic peptidoglycan transglycosylase rlpa | D5071_07600 | Not Available | Positive | 1615457 - 1616581 | 39271.0 |
| serine-type d-ala-d-ala carboxypeptidase | D5071_07605 | Not Available | Positive | 1616748 - 1617959 | 44061.8 |
| duf493 family protein | D5071_07610 | Not Available | Positive | 1618110 - 1618373 | 9846.98 |
| lipoyl(octanoyl) transferase lipb | D5071_07615 | Not Available | Positive | 1618558 - 1619232 | 24833.1 |
| lipoyl synthase | D5071_07620 | Not Available | Positive | 1619460 - 1620425 | 36194.8 |
| twin-arginine translocase subunit tate | D5071_07625 | Not Available | Negative | 1620508 - 1620705 | 6828.37 |
| fluoride efflux transporter crcb | D5071_07630 | Not Available | Positive | 1621141 - 1621524 | 13426.7 |
| cold shock-like protein cspe | D5071_07635 | Not Available | Negative | 1621606 - 1621845 | 8567.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
