Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid abc transporter permease | D5071_07540 | Not Available | Positive | 1603583 - 1604323 | 27122.8 |
| glutamate/aspartate abc transporter permease gltk | D5071_07545 | Not Available | Positive | 1604327 - 1605001 | 25006.5 |
| amino acid abc transporter atp-binding protein | D5071_07550 | Not Available | Positive | 1605001 - 1605726 | 26763.8 |
| zinc ribbon-containing protein | D5071_07555 | Not Available | Negative | 1605777 - 1606259 | 18708.0 |
| leucine--trna ligase | D5071_07560 | Not Available | Positive | 1606570 - 1609152 | 97099.6 |
| lps assembly lipoprotein lpte | D5071_07565 | Not Available | Positive | 1609167 - 1609721 | 20387.5 |
| dna polymerase iii subunit delta | D5071_07570 | Not Available | Positive | 1609718 - 1610743 | 38893.4 |
| nicotinate-nucleotide adenylyltransferase | D5071_07575 | Not Available | Positive | 1610710 - 1611399 | 25741.7 |
| ribosome silencing factor rsfs | D5071_07580 | Not Available | Positive | 1611594 - 1611911 | 11428.6 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | D5071_07585 | Not Available | Positive | 1611913 - 1612383 | 17656.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
