Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pilus assembly protein | D5071_00185 | Not Available | Positive | 26692 - 27163 | 17377.0 |
| duf1481 domain-containing protein | D5071_00190 | Not Available | Negative | 27233 - 27919 | 25797.8 |
| dna-binding protein hu-alpha | D5071_00195 | Not Available | Negative | 27924 - 28196 | 9520.45 |
| duf416 family protein | D5071_00200 | Not Available | Negative | 28401 - 28991 | 22545.1 |
| deoxyribonuclease v | D5071_00205 | Not Available | Negative | 29069 - 29758 | 25602.9 |
| uroporphyrinogen decarboxylase | D5071_00210 | Not Available | Negative | 29774 - 30838 | 39005.0 |
| nad(+) diphosphatase | D5071_00215 | Not Available | Negative | 30979 - 31761 | 29743.7 |
| sigma d regulator | D5071_00220 | Not Available | Positive | 31870 - 32331 | 17566.7 |
| phosphomethylpyrimidine synthase thic | D5071_00225 | Not Available | Positive | 32723 - 34702 | 73593.5 |
| thiamine phosphate synthase | D5071_00230 | Not Available | Positive | 34699 - 35340 | 23214.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
