Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribulose-phosphate 3-epimerase | D5071_07380 | Not Available | Negative | 1569999 - 1570676 | 24518.6 |
| adenine-specific dna-methyltransferase | D5071_07385 | Not Available | Negative | 1570789 - 1571601 | 31501.4 |
| spor domain-containing protein | D5071_07390 | Not Available | Negative | 1571681 - 1572697 | 35034.8 |
| 3-dehydroquinate synthase | D5071_07395 | Not Available | Negative | 1572864 - 1573949 | 38761.2 |
| shikimate kinase | D5071_07400 | Not Available | Negative | 1574001 - 1574522 | 19533.2 |
| dna uptake porin hofq | D5071_07410 | Not Available | Negative | 1574874 - 1576148 | 46095.6 |
| duf2531 family protein | D5071_07415 | Not Available | Negative | 1576248 - 1576625 | 13537.5 |
| hypothetical protein | D5071_07420 | Not Available | Negative | 1576622 - 1577206 | 21117.8 |
| fimbrial protein | D5071_07425 | Not Available | Negative | 1577199 - 1577768 | 22403.9 |
| pilus assembly protein hofm | D5071_07430 | Not Available | Negative | 1577771 - 1578622 | 32251.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
