Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf805 domain-containing protein | D5071_06655 | Not Available | Negative | 1406258 - 1406680 | 16150.1 |
| duf1454 family protein | D5071_06660 | Not Available | Positive | 1406898 - 1407497 | 21887.2 |
| triose-phosphate isomerase | D5071_06665 | Not Available | Positive | 1407663 - 1408430 | 26795.0 |
| agmatine deiminase | D5071_06670 | Not Available | Negative | 1408567 - 1409670 | 40827.2 |
| n-carbamoylputrescine amidase | D5071_06675 | Not Available | Negative | 1409674 - 1410558 | 32679.8 |
| hypothetical protein | D5071_06685 | Not Available | Positive | 1412156 - 1412536 | 15005.5 |
| pts n-acetylmuramic acid transporter subunits iibc | D5071_06690 | Not Available | Negative | 1412790 - 1414238 | 51103.1 |
| n-acetylmuramic acid 6-phosphate etherase | D5071_06695 | Not Available | Negative | 1414241 - 1415149 | 31735.4 |
| sis domain-containing protein | D5071_06700 | Not Available | Positive | 1415377 - 1416237 | 31534.2 |
| glycoside hydrolase family 3 protein | D5071_06705 | Not Available | Positive | 1416502 - 1418373 | 68964.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
