Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb system transport protein tonb | D5071_06405 | Not Available | Positive | 1353029 - 1353787 | 27857.6 |
| acyl-coa thioester hydrolase ycia | D5071_06410 | Not Available | Negative | 1353890 - 1354312 | 15160.2 |
| septation protein a | D5071_06415 | Not Available | Negative | 1354332 - 1354901 | 21797.4 |
| upf0259 family protein | D5071_06420 | Not Available | Negative | 1355101 - 1355853 | 26667.1 |
| outer membrane protein ompw | D5071_06425 | Not Available | Positive | 1356203 - 1356835 | 23081.6 |
| porin | D5071_06430 | Not Available | Negative | 1356965 - 1357684 | 27178.9 |
| tryptophan synthase subunit alpha | D5071_06435 | Not Available | Negative | 1358070 - 1358876 | 28738.6 |
| tryptophan synthase subunit beta | D5071_06440 | Not Available | Negative | 1358876 - 1360066 | 42741.4 |
| bifunctional indole-3-glycerol-phosphate synthase trpc/phosphoribosylanthranilate isomerase trpf | D5071_06445 | Not Available | Negative | 1360083 - 1361450 | 49920.6 |
| anthranilate phosphoribosyltransferase | D5071_06450 | Not Available | Negative | 1361458 - 1362456 | 35317.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
