Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iii subunit chi | D5071_06190 | Not Available | Negative | 1310511 - 1310960 | 16883.9 |
| cytosol aminopeptidase | D5071_06195 | Not Available | Negative | 1311065 - 1312576 | 55032.3 |
| lipopolysaccharide abc transporter permease lptf | D5071_06200 | Not Available | Positive | 1312860 - 1313975 | 41263.3 |
| lps export abc transporter permease lptg | D5071_06205 | Not Available | Positive | 1313975 - 1315051 | 39393.4 |
| Trna-leu | Not Available | Not Available | Positive | 1315282 - 1315366 | Not Available |
| duf4102 domain-containing protein | D5071_06215 | Not Available | Positive | 1315587 - 1316843 | 48180.9 |
| copg family transcriptional regulator | D5071_06220 | Not Available | Positive | 1316863 - 1317024 | 5967.36 |
| hypothetical protein | D5071_06225 | Not Available | Negative | 1317111 - 1318022 | 35118.1 |
| xre family transcriptional regulator | D5071_06235 | Not Available | Negative | 1318522 - 1318806 | 10090.2 |
| type ii toxin-antitoxin system rele/pare family toxin | D5071_06240 | Not Available | Negative | 1318796 - 1319116 | 12162.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
