Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gfo/idh/moca family oxidoreductase | D5071_06025 | Not Available | Negative | 1265000 - 1265998 | 36615.5 |
| 23s rrna (guanine(1835)-n(2))-methyltransferase rlmg | D5071_06030 | Not Available | Positive | 1266160 - 1267299 | 42198.9 |
| nadph-dependent 2,4-dienoyl-coa reductase | D5071_06035 | Not Available | Negative | 1267394 - 1269469 | 75287.5 |
| hypothetical protein | D5071_06040 | Not Available | Positive | 1269685 - 1269981 | 11530.7 |
| atp-independent periplasmic protein-refolding chaperone | D5071_06045 | Not Available | Positive | 1270168 - 1270656 | 18107.9 |
| ggdef domain-containing protein | D5071_06050 | Not Available | Positive | 1270973 - 1272442 | 55392.6 |
| duf305 domain-containing protein | D5071_06055 | Not Available | Positive | 1272513 - 1272875 | 13313.1 |
| pts beta-glucoside transporter subunit iiabc | D5071_06060 | Not Available | Positive | 1273193 - 1275109 | 67638.2 |
| porin | D5071_06065 | Not Available | Negative | 1275199 - 1276689 | 55995.2 |
| beta-phosphoglucomutase | D5071_06070 | Not Available | Negative | 1276759 - 1277430 | 24655.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
