Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rhamnulose-1-phosphate aldolase | D5071_00010 | Not Available | Negative | 593 - 1417 | 30129.2 |
| l-rhamnose isomerase | D5071_00015 | Not Available | Negative | 1422 - 2684 | 47282.1 |
| rhamnulokinase | D5071_00020 | Not Available | Negative | 2681 - 4171 | 54522.0 |
| hth-type transcriptional activator rhas | D5071_00025 | Not Available | Positive | 4508 - 5347 | 31820.4 |
| helix-turn-helix domain-containing protein | D5071_00030 | Not Available | Positive | 5372 - 6226 | 32708.1 |
| lysr family transcriptional regulator | D5071_00040 | Not Available | Negative | 8206 - 9129 | 34134.5 |
| txe/yoeb family addiction module toxin | D5071_00045 | Not Available | Negative | 9471 - 9725 | 10262.4 |
| yoeb-yefm toxin-antitoxin system antitoxin yefm | D5071_00050 | Not Available | Negative | 9722 - 9973 | 9368.2 |
| abc transporter atp-binding protein | D5071_00055 | Not Available | Negative | 10049 - 11758 | 61379.9 |
| abc transporter permease | D5071_00060 | Not Available | Negative | 11755 - 12621 | 30765.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
