Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| coa pyrophosphatase | D5071_05660 | Not Available | Negative | 1199620 - 1200213 | 22198.8 |
| aminodeoxychorismate synthase component 1 | D5071_05665 | Not Available | Negative | 1200210 - 1201652 | 53444.4 |
| yoah family protein | D5071_05670 | Not Available | Positive | 1201796 - 1202044 | 9164.14 |
| gnat family n-acetyltransferase | D5071_05675 | Not Available | Negative | 1202357 - 1202851 | 17707.6 |
| duf1778 domain-containing protein | D5071_05680 | Not Available | Negative | 1202848 - 1203141 | 10941.2 |
| transcriptional regulator | D5071_05685 | Not Available | Negative | 1203486 - 1203728 | 8646.23 |
| xre family transcriptional regulator | D5071_05690 | Not Available | Positive | 1203832 - 1204080 | 9285.39 |
| type ii toxin-antitoxin system antitoxin ccda | D5071_05695 | Not Available | Positive | 1204094 - 1204312 | 8166.6 |
| hypothetical protein | D5071_05705 | Not Available | Negative | 1204466 - 1204972 | 17586.2 |
| alpha/beta fold hydrolase | D5071_05710 | Not Available | Negative | 1204944 - 1205675 | 27170.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
