Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| translation initiation factor if-3 | D5071_05460 | Not Available | Positive | 1159961 - 1160503 | 20551.1 |
| 50s ribosomal protein l35 | D5071_05465 | Not Available | Positive | 1160599 - 1160796 | 7265.29 |
| 50s ribosomal protein l20 | D5071_05470 | Not Available | Positive | 1160840 - 1161196 | 13483.7 |
| phenylalanine--trna ligase subunit alpha | D5071_05475 | Not Available | Positive | 1161515 - 1162498 | 37155.4 |
| phenylalanine--trna ligase subunit beta | D5071_05480 | Not Available | Positive | 1162513 - 1164900 | 86716.0 |
| integration host factor subunit alpha | D5071_05485 | Not Available | Positive | 1164905 - 1165201 | 11239.5 |
| nitrous oxide-stimulated promoter family protein | D5071_05490 | Not Available | Negative | 1165262 - 1165687 | 16394.9 |
| abc transporter atp-binding protein | D5071_05495 | Not Available | Negative | 1165824 - 1167542 | 63383.2 |
| drug/metabolite dmt transporter permease | D5071_05500 | Not Available | Negative | 1167673 - 1168560 | 32249.8 |
| ammonia-dependent nad(+) synthetase | D5071_05505 | Not Available | Negative | 1168649 - 1169473 | 30310.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
