Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response regulator | D5071_05410 | Not Available | Positive | 1147531 - 1148280 | 29286.4 |
| mfs transporter | D5071_05415 | Not Available | Positive | 1148465 - 1149688 | 43403.3 |
| sn-glycerol-3-phosphate abc transporter substrate-binding protein ugpb | D5071_05420 | Not Available | Positive | 1149940 - 1151277 | 49883.5 |
| glycerophosphodiester phosphodiesterase | D5071_05425 | Not Available | Positive | 1151308 - 1152156 | 30782.7 |
| protease htpx | D5071_05430 | Not Available | Positive | 1152320 - 1153201 | 32055.2 |
| oligogalacturonate lyase | D5071_05435 | Not Available | Positive | 1153555 - 1154721 | 44441.0 |
| dna-binding transcriptional regulator kdgr | D5071_05440 | Not Available | Positive | 1154936 - 1155727 | 29701.5 |
| hypothetical protein | D5071_05445 | Not Available | Positive | 1155984 - 1156247 | 10037.3 |
| amino acid permease | D5071_05450 | Not Available | Positive | 1156375 - 1157775 | 51051.9 |
| threonine--trna ligase | D5071_05455 | Not Available | Positive | 1158030 - 1159958 | 73755.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
