Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| murr/rpir family transcriptional regulator | D5071_05360 | Not Available | Negative | 1133552 - 1134421 | 32192.8 |
| glucose-6-phosphate dehydrogenase | D5071_05365 | Not Available | Positive | 1134805 - 1136280 | 56037.9 |
| keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase | D5071_05370 | Not Available | Positive | 1136453 - 1137094 | 22267.2 |
| formate-dependent phosphoribosylglycinamide formyltransferase | D5071_05375 | Not Available | Negative | 1137149 - 1138327 | 42336.9 |
| oligopeptidase b | D5071_05380 | Not Available | Positive | 1138528 - 1140579 | 79115.7 |
| dna-binding protein | D5071_05385 | Not Available | Negative | 1140831 - 1141181 | 13363.0 |
| helix-turn-helix transcriptional regulator | D5071_05390 | Not Available | Negative | 1141670 - 1142404 | 26796.7 |
| hypothetical protein | D5071_05395 | Not Available | Positive | 1142807 - 1143064 | 9526.12 |
| eal domain-containing protein | D5071_05400 | Not Available | Positive | 1143458 - 1145626 | 80674.5 |
| sensor histidine kinase | D5071_05405 | Not Available | Positive | 1145789 - 1147534 | 64431.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
