Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate porin | D5071_05310 | Not Available | Negative | 1121622 - 1123001 | 50374.5 |
| pts lactose/cellobiose transporter subunit iia | D5071_05315 | Not Available | Negative | 1123167 - 1123475 | 11583.1 |
| pts sugar transporter subunit iic | D5071_05320 | Not Available | Negative | 1123638 - 1124966 | 48429.6 |
| laci family transcriptional regulator | D5071_05325 | Not Available | Positive | 1125429 - 1126388 | 34941.2 |
| zinc abc transporter permease subunit znub | D5071_05330 | Not Available | Negative | 1126465 - 1127250 | 27796.5 |
| zinc abc transporter atp-binding protein znuc | D5071_05335 | Not Available | Negative | 1127247 - 1128005 | 27738.2 |
| zinc abc transporter substrate-binding protein znua | D5071_05340 | Not Available | Positive | 1128083 - 1129084 | 36610.5 |
| murein dd-endopeptidase mepm | D5071_05345 | Not Available | Positive | 1129097 - 1130419 | 49369.9 |
| lauroyl-kdo(2)-lipid iv(a) myristoyltransferase | D5071_05350 | Not Available | Positive | 1130719 - 1131690 | 37454.6 |
| pyruvate kinase | D5071_05355 | Not Available | Negative | 1131845 - 1133287 | 51533.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
