Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium carotovorum |
| Strain | strain S1.15.11.2D |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Not Available |
| Biotic relationship | Free living |
| Host(s) | Viridiplantae, Solanum tuberosum, Daucus carota |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1180518 bp
Thymine Count
1171732 bp
Guanine Count
1226236 bp
Cytosine Count
1240350 bp
Genome Length
4818836 bp
Protein-coding Genes
4141 genes
Non-Coding Genes
122 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxy-s-adenosyl-l-methionine synthase cmoa | D5071_05260 | Not Available | Negative | 1112136 - 1112879 | 27769.5 |
| hypothetical protein | D5071_05265 | Not Available | Negative | 1113048 - 1113443 | 14944.0 |
| duf72 domain-containing protein | D5071_05270 | Not Available | Negative | 1113599 - 1114411 | 31256.2 |
| eal domain-containing protein | D5071_05275 | Not Available | Negative | 1114503 - 1115720 | 47063.9 |
| aspartate--trna ligase | D5071_05280 | Not Available | Positive | 1116198 - 1117994 | 66622.9 |
| dihydroneopterin triphosphate diphosphatase | D5071_05285 | Not Available | Positive | 1117996 - 1118439 | 17071.2 |
| yebc/pmpr family dna-binding transcriptional regulator | D5071_05290 | Not Available | Positive | 1118463 - 1119206 | 26420.9 |
| crossover junction endodeoxyribonuclease ruvc | D5071_05295 | Not Available | Positive | 1119304 - 1119825 | 18581.9 |
| holliday junction branch migration protein ruva | D5071_05300 | Not Available | Positive | 1119917 - 1120528 | 22192.1 |
| holliday junction branch migration dna helicase ruvb | D5071_05305 | Not Available | Positive | 1120536 - 1121546 | 37313.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft rot | Causes | PMC11149725 |
| Potato blackleg | Causes | PMC11677604 |
| Potato soft rot | Causes | PMC5376619 |
