Escherichia coli strain ET20

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain ET20 is a Gram-negative, rod-shaped bacterium that exhibits mobility and possesses flagella. This strain is a facultative anaerobe, capable of thriving in both oxygen-rich and oxygen-poor environments, and it optimally grows at 37°C, falling within the mesophilic temperature range. E. coli ET20 is characterized by its free-living biotic relationship and is associated with a diverse range of hosts, including Homo sapiens, various mammals (such as Bos taurus, Sus scrofa, and Canis lupus familiaris), birds (e.g., Gallus gallus and Meleagris gallopavo), and even plants like Solanum lycopersicum and Brassica oleracea var. italica. This strain is notable for its significant health impacts, particularly in humans, where it is implicated in a wide array of infections and diseases, including urinary tract infections (UTIs), gastrointestinal infections, and more severe conditions such as septicemia and neonatal meningitis. The strain is also linked to complications like hemolytic uremic syndrome (HUS) and various forms of diarrhea, including hemorrhagic colitis. The presence of E. coli ET20 in multiple hosts highlights its ecological versatility and potential for cross-species transmission. This adaptability may facilitate its role in both environmental and clinical settings, where it can contribute to the spread of pathogenic traits among different species, thereby impacting public health and disease management strategies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain ET20

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain ET20
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain ET20 contig203_Escherichia_coli, whole

Gene Summary

Adenine Count

1375231 bp

Thymine Count

1374082 bp

Guanine Count

1409302 bp

Cytosine Count

1401104 bp

Genome Length

5559719 bp

Protein-coding Genes

5145 genes

Non-Coding Genes

533 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Tyrosine-type recombinase/integraseD2183_03515Not AvailablePositive691690 - 69268237938.9
Dimethyl sulfoxide reductase dmsaD2183_03520Not AvailablePositive692982 - 69542690384.6
Anaerobic dimethyl sulfoxide reductase subunit bD2183_03525Not AvailablePositive695437 - 69605422870.1
Dmso reductase anchor subunit cD2183_03530Not AvailablePositive696056 - 69691930846.2
AttrNot AvailableNot AvailablePositive704664 - 704676Not Available
Lysr family transcriptional regulatorD2183_03550Not AvailableNegative700684 - 70159234272.4
nad(p)h oxidoreductaseD2183_03555Not AvailablePositive701692 - 70228222979.3
Anaerobic ribonucleoside-triphosphate reductase-activating proteinD2183_03560Not AvailableNegative702364 - 70316130100.0
AttlNot AvailableNot AvailablePositive702893 - 702905Not Available
IntegraseD2183_03565Not AvailableNegative703193 - 70418837934.0

Displaying genes 81 – 90 of 5678 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total