Hymenobacter rubripertinctus strain CCM 8852

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter rubripertinctus strain CCM 8852 is a Gram-negative bacterium characterized by its rod shape. This strain has been documented with a single replicon, which is a significant feature for understanding its genomic organization and replication dynamics. The sequence data for this strain is available under the accession number QYCN00000000.1. Hymenobacter rubripertinctus is part of the Hymenobacter genus, which is known for its ecological versatility. Members of this genus are often isolated from various environments, including soil and water, indicating their potential role in nutrient cycling and ecological interactions. The Gram-negative nature of this bacterium suggests that it possesses a complex cell wall structure, which may contribute to its adaptability in diverse habitats. The presence of a single replicon in strain CCM 8852 can provide insights into its evolutionary strategies and metabolic capabilities. The streamlined genomic architecture may allow for efficient replication and adaptation to environmental changes, which is a common trait among bacteria thriving in fluctuating conditions. In summary, Hymenobacter rubripertinctus strain CCM 8852, with its Gram-negative, rod-shaped morphology and single replicon, exemplifies a microorganism that is likely well-adapted to various ecological niches, underscoring the importance of such bacteria in maintaining ecosystem balance and functionality.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter rubripertinctus
Strainstrain CCM 8852

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter rubripertinctus strain CCM 8852 scaffold_145, whole

Gene Summary

Adenine Count

976622 bp

Thymine Count

975089 bp

Guanine Count

1572314 bp

Cytosine Count

1575162 bp

Genome Length

5099443 bp

Protein-coding Genes

4242 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sigma-54-dependent fis family transcriptional regulatorD0T11_17155Not AvailableNegative3993420 - 399459843452.6
is200/is605 family transposaseD0T11_17165Not AvailableNegative3995507 - 399599518241.9
peptidaseD0T11_17170Not AvailableNegative3996201 - 399807269627.8
duf2027 domain-containing proteinD0T11_17175Not AvailableNegative3998272 - 399939940734.0
duf2279 domain-containing proteinD0T11_17180Not AvailableNegative3999729 - 400063133698.4
t9ss c-terminal target domain-containing proteinD0T11_17185Not AvailablePositive4000874 - 4003702103995.0
n-acetylglucosamine kinaseD0T11_17190Not AvailableNegative4003816 - 400466431462.0
t9ss c-terminal target domain-containing proteinD0T11_17195Not AvailablePositive4005020 - 400618640159.5
ragb/susd family nutrient uptake outer membrane proteinD0T11_17200Not AvailableNegative4006574 - 400819359963.7
hypothetical proteinD0T11_17205Not AvailableNegative4008206 - 400871218743.1

Displaying genes 3411 – 3420 of 4315 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.