Hymenobacter rubripertinctus strain CCM 8852

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter rubripertinctus strain CCM 8852 is a Gram-negative bacterium characterized by its rod shape. This strain has been documented with a single replicon, which is a significant feature for understanding its genomic organization and replication dynamics. The sequence data for this strain is available under the accession number QYCN00000000.1. Hymenobacter rubripertinctus is part of the Hymenobacter genus, which is known for its ecological versatility. Members of this genus are often isolated from various environments, including soil and water, indicating their potential role in nutrient cycling and ecological interactions. The Gram-negative nature of this bacterium suggests that it possesses a complex cell wall structure, which may contribute to its adaptability in diverse habitats. The presence of a single replicon in strain CCM 8852 can provide insights into its evolutionary strategies and metabolic capabilities. The streamlined genomic architecture may allow for efficient replication and adaptation to environmental changes, which is a common trait among bacteria thriving in fluctuating conditions. In summary, Hymenobacter rubripertinctus strain CCM 8852, with its Gram-negative, rod-shaped morphology and single replicon, exemplifies a microorganism that is likely well-adapted to various ecological niches, underscoring the importance of such bacteria in maintaining ecosystem balance and functionality.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter rubripertinctus
Strainstrain CCM 8852

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter rubripertinctus strain CCM 8852 scaffold_145, whole

Gene Summary

Adenine Count

976622 bp

Thymine Count

975089 bp

Guanine Count

1572314 bp

Cytosine Count

1575162 bp

Genome Length

5099443 bp

Protein-coding Genes

4242 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysm peptidoglycan-binding domain-containing proteinD0T11_11785Not AvailablePositive2708430 - 270943435822.4
tigr02757 family proteinD0T11_11790Not AvailablePositive2709778 - 271053629536.4
hypothetical proteinD0T11_11795Not AvailableNegative2710599 - 271219759852.3
hypothetical proteinD0T11_11800Not AvailableNegative2712293 - 271288321450.7
hypothetical proteinD0T11_11805Not AvailableNegative2712944 - 271394236152.5
endonuclease muts2D0T11_11810Not AvailablePositive2714273 - 271669690413.4
23s rrna (adenine(1618)-n(6))-methyltransferase rlmfD0T11_11815Not AvailablePositive2716948 - 271788033973.4
t9ss c-terminal target domain-containing proteinD0T11_11820Not AvailableNegative2718096 - 272039681708.6
hypothetical proteinD0T11_11825Not AvailableNegative2720531 - 272151734026.6
udp-n-acetylmuramate dehydrogenaseD0T11_11830Not AvailableNegative2721743 - 272277137540.7

Displaying genes 2351 – 2360 of 4315 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.