Hymenobacter rubripertinctus strain CCM 8852

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter rubripertinctus strain CCM 8852 is a Gram-negative bacterium characterized by its rod shape. This strain has been documented with a single replicon, which is a significant feature for understanding its genomic organization and replication dynamics. The sequence data for this strain is available under the accession number QYCN00000000.1. Hymenobacter rubripertinctus is part of the Hymenobacter genus, which is known for its ecological versatility. Members of this genus are often isolated from various environments, including soil and water, indicating their potential role in nutrient cycling and ecological interactions. The Gram-negative nature of this bacterium suggests that it possesses a complex cell wall structure, which may contribute to its adaptability in diverse habitats. The presence of a single replicon in strain CCM 8852 can provide insights into its evolutionary strategies and metabolic capabilities. The streamlined genomic architecture may allow for efficient replication and adaptation to environmental changes, which is a common trait among bacteria thriving in fluctuating conditions. In summary, Hymenobacter rubripertinctus strain CCM 8852, with its Gram-negative, rod-shaped morphology and single replicon, exemplifies a microorganism that is likely well-adapted to various ecological niches, underscoring the importance of such bacteria in maintaining ecosystem balance and functionality.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter rubripertinctus
Strainstrain CCM 8852

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter rubripertinctus strain CCM 8852 scaffold_145, whole

Gene Summary

Adenine Count

976622 bp

Thymine Count

975089 bp

Guanine Count

1572314 bp

Cytosine Count

1575162 bp

Genome Length

5099443 bp

Protein-coding Genes

4242 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
23s rrna (uracil(1939)-c(5))-methyltransferase rlmdD0T11_09810Not AvailablePositive2223895 - 222524451265.2
giy-yig nuclease family proteinD0T11_09815Not AvailablePositive2225302 - 222558310792.8
hypothetical proteinD0T11_09820Not AvailablePositive2225697 - 222607114291.6
thiamine-phosphate kinaseD0T11_09825Not AvailableNegative2226227 - 222724636243.6
t9ss c-terminal target domain-containing proteinD0T11_09830Not AvailableNegative2227484 - 222855737665.1
tetr/acrr family transcriptional regulatorD0T11_09835Not AvailablePositive2228782 - 222937221777.9
1,2-phenylacetyl-coa epoxidase subunit aD0T11_09840Not AvailablePositive2229534 - 223049636529.8
phenylacetic acid degradation bD0T11_09845Not AvailablePositive2230653 - 223127623216.2
phenylacetate-coa oxygenase subunit paaiD0T11_09850Not AvailablePositive2231417 - 223216628076.4
phenylacetate-coa oxygenase subunit paajD0T11_09855Not AvailablePositive2232485 - 223297018208.9

Displaying genes 1961 – 1970 of 4315 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.