Hymenobacter rubripertinctus strain CCM 8852

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter rubripertinctus strain CCM 8852 is a Gram-negative bacterium characterized by its rod shape. This strain has been documented with a single replicon, which is a significant feature for understanding its genomic organization and replication dynamics. The sequence data for this strain is available under the accession number QYCN00000000.1. Hymenobacter rubripertinctus is part of the Hymenobacter genus, which is known for its ecological versatility. Members of this genus are often isolated from various environments, including soil and water, indicating their potential role in nutrient cycling and ecological interactions. The Gram-negative nature of this bacterium suggests that it possesses a complex cell wall structure, which may contribute to its adaptability in diverse habitats. The presence of a single replicon in strain CCM 8852 can provide insights into its evolutionary strategies and metabolic capabilities. The streamlined genomic architecture may allow for efficient replication and adaptation to environmental changes, which is a common trait among bacteria thriving in fluctuating conditions. In summary, Hymenobacter rubripertinctus strain CCM 8852, with its Gram-negative, rod-shaped morphology and single replicon, exemplifies a microorganism that is likely well-adapted to various ecological niches, underscoring the importance of such bacteria in maintaining ecosystem balance and functionality.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter rubripertinctus
Strainstrain CCM 8852

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter rubripertinctus strain CCM 8852 scaffold_145, whole

Gene Summary

Adenine Count

976622 bp

Thymine Count

975089 bp

Guanine Count

1572314 bp

Cytosine Count

1575162 bp

Genome Length

5099443 bp

Protein-coding Genes

4242 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-isopropylmalate dehydrogenaseD0T11_09005Not AvailableNegative2027538 - 202866240867.0
3-isopropylmalate dehydratase small subunitD0T11_09010Not AvailableNegative2028650 - 202924922213.3
3-isopropylmalate dehydratase large subunitD0T11_09015Not AvailableNegative2029358 - 203077050266.2
2-isopropylmalate synthaseD0T11_09020Not AvailableNegative2030975 - 203214141926.2
threonine dehydrataseD0T11_09025Not AvailableNegative2033122 - 203439946398.9
ketol-acid reductoisomeraseD0T11_09030Not AvailableNegative2034608 - 203570539520.5
acetolactate synthase small subunitD0T11_09035Not AvailableNegative2035858 - 203644823022.7
biosynthetic-type acetolactate synthase large subunitD0T11_09040Not AvailableNegative2036578 - 203834463753.9
dihydroxy-acid dehydrataseD0T11_09045Not AvailableNegative2038301 - 204002560750.3
branched-chain amino acid transaminaseD0T11_09050Not AvailableNegative2040125 - 204101231918.1

Displaying genes 1801 – 1810 of 4315 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.