Hymenobacter rubripertinctus strain CCM 8852

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter rubripertinctus strain CCM 8852 is a Gram-negative bacterium characterized by its rod shape. This strain has been documented with a single replicon, which is a significant feature for understanding its genomic organization and replication dynamics. The sequence data for this strain is available under the accession number QYCN00000000.1. Hymenobacter rubripertinctus is part of the Hymenobacter genus, which is known for its ecological versatility. Members of this genus are often isolated from various environments, including soil and water, indicating their potential role in nutrient cycling and ecological interactions. The Gram-negative nature of this bacterium suggests that it possesses a complex cell wall structure, which may contribute to its adaptability in diverse habitats. The presence of a single replicon in strain CCM 8852 can provide insights into its evolutionary strategies and metabolic capabilities. The streamlined genomic architecture may allow for efficient replication and adaptation to environmental changes, which is a common trait among bacteria thriving in fluctuating conditions. In summary, Hymenobacter rubripertinctus strain CCM 8852, with its Gram-negative, rod-shaped morphology and single replicon, exemplifies a microorganism that is likely well-adapted to various ecological niches, underscoring the importance of such bacteria in maintaining ecosystem balance and functionality.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter rubripertinctus
Strainstrain CCM 8852

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter rubripertinctus strain CCM 8852 scaffold_145, whole

Gene Summary

Adenine Count

976622 bp

Thymine Count

975089 bp

Guanine Count

1572314 bp

Cytosine Count

1575162 bp

Genome Length

5099443 bp

Protein-coding Genes

4242 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fad-dependent oxidoreductaseD0T11_07375Not AvailablePositive1645838 - 164712146176.6
exodeoxyribonuclease iiiD0T11_07380Not AvailableNegative1647556 - 164832628995.3
hypothetical proteinD0T11_07385Not AvailableNegative1648613 - 164897514376.2
carboxymuconolactone decarboxylase family proteinD0T11_07390Not AvailableNegative1648978 - 164935514229.0
comf family proteinD0T11_07395Not AvailablePositive1649511 - 165021226088.4
gliding motility lipoprotein gldjD0T11_07400Not AvailableNegative1650350 - 165161546959.5
type ix secretion system membrane protein porp/sprfD0T11_07405Not AvailableNegative1651681 - 165283242322.1
asma family proteinD0T11_07410Not AvailablePositive1652996 - 1656085110928.0
duf4382 domain-containing proteinD0T11_07415Not AvailablePositive1656209 - 165705730755.7
insulinase family proteinD0T11_07420Not AvailableNegative1657932 - 165920947466.8

Displaying genes 1481 – 1490 of 4315 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.