Amnibacterium setariae strain DD4a

rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Amnibacterium

Description

Amnibacterium setariae strain DD4a is a Gram-positive, rod-shaped bacterium characterized by a single replicon. This organism is cataloged under the accession number QXTG00000000.1, which provides a reference for its genomic information and classification. The Gram-positive nature of A. setariae indicates that it possesses a thick peptidoglycan layer in its cell wall, a feature commonly associated with increased resistance to environmental stressors. The rod shape is typical of many bacterial species and may influence its motility and ecological interactions. The presence of a single replicon suggests a streamlined genomic structure, which can be associated with efficient replication processes and potentially a focused metabolic capability. This trait may facilitate adaptation to specific ecological niches, particularly in environments where resources are limited. In summary, Amnibacterium setariae strain DD4a exhibits significant traits such as being Gram-positive, rod-shaped, and possessing a single replicon. These characteristics may play a crucial role in its ecological interactions and adaptability, making it an interesting subject for further microbiological and ecological studies.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusAmnibacterium
SpeciesAmnibacterium setariae
Strainstrain DD4a

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Amnibacterium setariae strain DD4a contig5, whole genome shotgun

Gene Summary

Adenine Count

456377 bp

Thymine Count

452969 bp

Guanine Count

1283414 bp

Cytosine Count

1289945 bp

Genome Length

3482706 bp

Protein-coding Genes

3370 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
csbd family proteinD1781_13755Not AvailableNegative2767494 - 27676645960.93
asp23/gls24 family envelope stress response proteinD1781_13760Not AvailableNegative2767720 - 276820516181.9
sigma-70 family rna polymerase sigma factorD1781_13765Not AvailablePositive2768284 - 276890422473.9
hypothetical proteinD1781_13770Not AvailablePositive2768901 - 276949421415.7
hypothetical proteinD1781_13775Not AvailablePositive2769491 - 27697669472.41
hypothetical proteinD1781_13780Not AvailableNegative2769780 - 277017214469.2
xre family transcriptional regulatorD1781_13785Not AvailableNegative2770189 - 277103431120.3
sdr family nad(p)-dependent oxidoreductaseD1781_13790Not AvailableNegative2771128 - 277206632686.4
fadr family transcriptional regulatorD1781_13795Not AvailablePositive2772053 - 277299733275.4
sdr family oxidoreductaseD1781_13800Not AvailablePositive2773136 - 277389725825.6

Displaying genes 2721 – 2730 of 3420 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.