Kingdom
Bacillati
Phylum
Actinomycetota
Class
Actinomycetes
Order
Micrococcales
Family
Microbacteriaceae
Genus
Amnibacterium
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Amnibacterium |
| Species | Amnibacterium setariae |
| Strain | strain DD4a |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-positive |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
456377 bp
Thymine Count
452969 bp
Guanine Count
1283414 bp
Cytosine Count
1289945 bp
Genome Length
3482706 bp
Protein-coding Genes
3370 genes
Non-Coding Genes
50 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| translation initiation factor if-3 | D1781_07810 | Not Available | Positive | 1550678 - 1551364 | 25519.3 |
| 50s ribosomal protein l35 | D1781_07815 | Not Available | Positive | 1551364 - 1551558 | 7092.8 |
| 50s ribosomal protein l20 | D1781_07820 | Not Available | Positive | 1551587 - 1551973 | 14409.5 |
| rna methyltransferase | D1781_07825 | Not Available | Positive | 1552065 - 1552853 | 27259.4 |
| ycii family protein | D1781_07830 | Not Available | Positive | 1553027 - 1553458 | 15740.3 |
| sigma-70 family rna polymerase sigma factor | D1781_07835 | Not Available | Positive | 1553422 - 1554690 | 44692.0 |
| dmt family transporter | D1781_07840 | Not Available | Negative | 1554710 - 1555561 | 28249.4 |
| srpbcc family protein | D1781_07845 | Not Available | Negative | 1555588 - 1556085 | 18126.9 |
| phenylalanine--trna ligase subunit alpha | D1781_07850 | Not Available | Positive | 1556218 - 1557258 | 37486.5 |
| phenylalanine--trna ligase subunit beta | D1781_07855 | Not Available | Positive | 1557258 - 1559777 | 87239.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
