Amnibacterium setariae strain DD4a

rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Amnibacterium

Description

Amnibacterium setariae strain DD4a is a Gram-positive, rod-shaped bacterium characterized by a single replicon. This organism is cataloged under the accession number QXTG00000000.1, which provides a reference for its genomic information and classification. The Gram-positive nature of A. setariae indicates that it possesses a thick peptidoglycan layer in its cell wall, a feature commonly associated with increased resistance to environmental stressors. The rod shape is typical of many bacterial species and may influence its motility and ecological interactions. The presence of a single replicon suggests a streamlined genomic structure, which can be associated with efficient replication processes and potentially a focused metabolic capability. This trait may facilitate adaptation to specific ecological niches, particularly in environments where resources are limited. In summary, Amnibacterium setariae strain DD4a exhibits significant traits such as being Gram-positive, rod-shaped, and possessing a single replicon. These characteristics may play a crucial role in its ecological interactions and adaptability, making it an interesting subject for further microbiological and ecological studies.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusAmnibacterium
SpeciesAmnibacterium setariae
Strainstrain DD4a

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Amnibacterium setariae strain DD4a contig5, whole genome shotgun

Gene Summary

Adenine Count

456377 bp

Thymine Count

452969 bp

Guanine Count

1283414 bp

Cytosine Count

1289945 bp

Genome Length

3482706 bp

Protein-coding Genes

3370 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
redox-regulated atpase ychfD1781_05895Not AvailablePositive1164722 - 116579237661.9
l-serine ammonia-lyaseD1781_05900Not AvailablePositive1165945 - 116736048212.7
peptidase s16D1781_05905Not AvailablePositive1167623 - 116821321604.8
glycine cleavage system aminomethyltransferase gcvtD1781_05910Not AvailablePositive1168531 - 116967340425.2
glycine cleavage system protein gcvhD1781_05915Not AvailablePositive1169676 - 117005012778.8
glycine dehydrogenase (aminomethyl-transferring)D1781_05920Not AvailablePositive1170047 - 1173022104517.0
2'-5' rna ligase family proteinD1781_05925Not AvailableNegative1173101 - 117367620338.4
gnat family n-acetyltransferaseD1781_05930Not AvailableNegative1173657 - 117467635483.3
cpbp family intramembrane metalloproteaseD1781_05935Not AvailableNegative1174454 - 117523027419.0
abc transporter permeaseD1781_05940Not AvailablePositive1175437 - 117652537977.5

Displaying genes 1171 – 1180 of 3420 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.