Amnibacterium setariae strain DD4a

rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Amnibacterium

Description

Amnibacterium setariae strain DD4a is a Gram-positive, rod-shaped bacterium characterized by a single replicon. This organism is cataloged under the accession number QXTG00000000.1, which provides a reference for its genomic information and classification. The Gram-positive nature of A. setariae indicates that it possesses a thick peptidoglycan layer in its cell wall, a feature commonly associated with increased resistance to environmental stressors. The rod shape is typical of many bacterial species and may influence its motility and ecological interactions. The presence of a single replicon suggests a streamlined genomic structure, which can be associated with efficient replication processes and potentially a focused metabolic capability. This trait may facilitate adaptation to specific ecological niches, particularly in environments where resources are limited. In summary, Amnibacterium setariae strain DD4a exhibits significant traits such as being Gram-positive, rod-shaped, and possessing a single replicon. These characteristics may play a crucial role in its ecological interactions and adaptability, making it an interesting subject for further microbiological and ecological studies.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusAmnibacterium
SpeciesAmnibacterium setariae
Strainstrain DD4a

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Amnibacterium setariae strain DD4a contig5, whole genome shotgun

Gene Summary

Adenine Count

456377 bp

Thymine Count

452969 bp

Guanine Count

1283414 bp

Cytosine Count

1289945 bp

Genome Length

3482706 bp

Protein-coding Genes

3370 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
endo-1,4-beta-xylanaseD1781_05035Not AvailablePositive992673 - 99377340429.1
dihydroxy-acid dehydrataseD1781_05040Not AvailableNegative993996 - 99577762434.3
zn-dependent alcohol dehydrogenaseD1781_05045Not AvailableNegative995789 - 99690138130.2
glycoside hydrolase family 5 proteinD1781_05050Not AvailableNegative996898 - 99816948392.4
alpha-xylosidaseD1781_05055Not AvailableNegative998332 - 100065985004.7
sugar abc transporter substrate-binding proteinD1781_05060Not AvailablePositive1000876 - 100193436036.5
sugar abc transporter atp-binding proteinD1781_05065Not AvailablePositive1002047 - 100281126919.7
abc transporter permeaseD1781_05070Not AvailablePositive1002808 - 100410344251.4
sugar abc transporter substrate-binding proteinD1781_05075Not AvailablePositive1004492 - 100560439298.4
atp-binding cassette domain-containing proteinD1781_05080Not AvailablePositive1005710 - 100725155987.4

Displaying genes 1001 – 1010 of 3420 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.