Sphingomonas edaphi strain DAC4

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas edaphi strain DAC4 is a rod-shaped bacterium notable for its single replicon. This strain possesses flagella, indicating that it has the capability for motility, which may play a role in its ecological interactions. The genomic details of Sphingomonas edaphi strain DAC4 are captured in the accession QXTF00000000.1, providing a reference point for further studies regarding its genetic makeup and potential applications. The presence of flagella suggests that Sphingomonas edaphi strain DAC4 may be adapted to environments where movement toward nutrients or away from harmful substances is advantageous. This motility could facilitate its role in biogeochemical cycles, as it might be involved in the degradation of organic compounds or in the maintenance of microbial diversity within its habitat. The ecological significance of Sphingomonas species often lies in their ability to degrade complex organic compounds, making them important players in soil and water ecosystems. Therefore, understanding the specific characteristics and capabilities of Sphingomonas edaphi strain DAC4 can provide insights into its potential contributions to nutrient cycling and ecological balance in its native environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas edaphi
Strainstrain DAC4

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas edaphi strain DAC4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas edaphi strain DAC4 contig5, whole genome shotgun

Gene Summary

Adenine Count

449324 bp

Thymine Count

448770 bp

Guanine Count

736304 bp

Cytosine Count

738754 bp

Genome Length

2373152 bp

Protein-coding Genes

2311 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cupin domain-containing proteinD3M59_01970Not AvailableNegative381815 - 38226416449.2
succinyl-diaminopimelate desuccinylaseD3M59_01975Not AvailablePositive382291 - 38342140298.8
eal domain-containing proteinD3M59_01980Not AvailableNegative383418 - 38510060693.5
dna mismatch repair protein mutsD3M59_01985Not AvailableNegative385195 - 38571919251.2
hypothetical proteinD3M59_01990Not AvailableNegative385700 - 38687241411.8
tim44 domain-containing proteinD3M59_01995Not AvailableNegative386869 - 38752823600.9
protein-export chaperone secbD3M59_02000Not AvailablePositive387723 - 38825018467.7
murein biosynthesis integral membrane protein murjD3M59_02005Not AvailablePositive388266 - 38981955183.3
tryptophan--trna ligaseD3M59_02010Not AvailablePositive389831 - 39082635563.9
duf4136 domain-containing proteinD3M59_02015Not AvailablePositive390956 - 39160324184.4

Displaying genes 391 – 400 of 2362 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.