Sphingomonas edaphi strain DAC4

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas edaphi strain DAC4 is a rod-shaped bacterium notable for its single replicon. This strain possesses flagella, indicating that it has the capability for motility, which may play a role in its ecological interactions. The genomic details of Sphingomonas edaphi strain DAC4 are captured in the accession QXTF00000000.1, providing a reference point for further studies regarding its genetic makeup and potential applications. The presence of flagella suggests that Sphingomonas edaphi strain DAC4 may be adapted to environments where movement toward nutrients or away from harmful substances is advantageous. This motility could facilitate its role in biogeochemical cycles, as it might be involved in the degradation of organic compounds or in the maintenance of microbial diversity within its habitat. The ecological significance of Sphingomonas species often lies in their ability to degrade complex organic compounds, making them important players in soil and water ecosystems. Therefore, understanding the specific characteristics and capabilities of Sphingomonas edaphi strain DAC4 can provide insights into its potential contributions to nutrient cycling and ecological balance in its native environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas edaphi
Strainstrain DAC4

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas edaphi strain DAC4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas edaphi strain DAC4 contig5, whole genome shotgun

Gene Summary

Adenine Count

449324 bp

Thymine Count

448770 bp

Guanine Count

736304 bp

Cytosine Count

738754 bp

Genome Length

2373152 bp

Protein-coding Genes

2311 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lytic transglycosylase domain-containing proteinD3M59_01410Not AvailablePositive275621 - 27759772672.0
transcription elongation factor grebD3M59_01415Not AvailablePositive277609 - 27810918629.0
polyphosphate kinaseD3M59_01420Not AvailableNegative278106 - 27891530099.4
aspartate--trna ligaseD3M59_01425Not AvailableNegative278980 - 28076765680.5
ribonuclease dD3M59_01430Not AvailablePositive280882 - 28208444261.1
peptidase inhibitor i78D3M59_01435Not AvailablePositive282084 - 28241311611.2
ppx/gppa family phosphataseD3M59_01440Not AvailableNegative282410 - 28387351844.3
rna degradosome polyphosphate kinaseD3M59_01445Not AvailableNegative283878 - 28600479152.6
chromosomal replication initiator dnaaD3M59_01450Not AvailableNegative286001 - 28685232141.4
phosphoribosylformylglycinamidine cyclo-ligaseD3M59_01455Not AvailablePositive287892 - 28898337629.0

Displaying genes 281 – 290 of 2362 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.