Sphingomonas edaphi strain DAC4

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas edaphi strain DAC4 is a rod-shaped bacterium notable for its single replicon. This strain possesses flagella, indicating that it has the capability for motility, which may play a role in its ecological interactions. The genomic details of Sphingomonas edaphi strain DAC4 are captured in the accession QXTF00000000.1, providing a reference point for further studies regarding its genetic makeup and potential applications. The presence of flagella suggests that Sphingomonas edaphi strain DAC4 may be adapted to environments where movement toward nutrients or away from harmful substances is advantageous. This motility could facilitate its role in biogeochemical cycles, as it might be involved in the degradation of organic compounds or in the maintenance of microbial diversity within its habitat. The ecological significance of Sphingomonas species often lies in their ability to degrade complex organic compounds, making them important players in soil and water ecosystems. Therefore, understanding the specific characteristics and capabilities of Sphingomonas edaphi strain DAC4 can provide insights into its potential contributions to nutrient cycling and ecological balance in its native environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas edaphi
Strainstrain DAC4

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas edaphi strain DAC4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas edaphi strain DAC4 contig5, whole genome shotgun

Gene Summary

Adenine Count

449324 bp

Thymine Count

448770 bp

Guanine Count

736304 bp

Cytosine Count

738754 bp

Genome Length

2373152 bp

Protein-coding Genes

2311 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
metallopeptidase family proteinD3M59_11605Not AvailablePositive2317142 - 231754014865.5
atp-binding cassette domain-containing proteinD3M59_11610Not AvailablePositive2317537 - 231808818974.3
heme abc transporter permease ccmbD3M59_11615Not AvailablePositive2318085 - 231872321090.5
class i sam-dependent rrna methyltransferaseD3M59_11620Not AvailableNegative2318720 - 231958932302.6
insulinase family proteinD3M59_11625Not AvailableNegative2319586 - 232081243092.4
surf1 family proteinD3M59_11630Not AvailableNegative2320805 - 232140120935.7
duf983 domain-containing proteinD3M59_11635Not AvailableNegative2321398 - 232177513116.2
cytochrome c oxidase subunit 3D3M59_11640Not AvailableNegative2321775 - 232262931759.7
cytochrome c oxidase assembly proteinD3M59_11645Not AvailableNegative2322660 - 232320519917.7
protoheme ix farnesyltransferaseD3M59_11650Not AvailableNegative2323330 - 232424132487.0

Displaying genes 2301 – 2310 of 2362 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.