Sphingomonas edaphi strain DAC4

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas edaphi strain DAC4 is a rod-shaped bacterium notable for its single replicon. This strain possesses flagella, indicating that it has the capability for motility, which may play a role in its ecological interactions. The genomic details of Sphingomonas edaphi strain DAC4 are captured in the accession QXTF00000000.1, providing a reference point for further studies regarding its genetic makeup and potential applications. The presence of flagella suggests that Sphingomonas edaphi strain DAC4 may be adapted to environments where movement toward nutrients or away from harmful substances is advantageous. This motility could facilitate its role in biogeochemical cycles, as it might be involved in the degradation of organic compounds or in the maintenance of microbial diversity within its habitat. The ecological significance of Sphingomonas species often lies in their ability to degrade complex organic compounds, making them important players in soil and water ecosystems. Therefore, understanding the specific characteristics and capabilities of Sphingomonas edaphi strain DAC4 can provide insights into its potential contributions to nutrient cycling and ecological balance in its native environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas edaphi
Strainstrain DAC4

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas edaphi strain DAC4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas edaphi strain DAC4 contig5, whole genome shotgun

Gene Summary

Adenine Count

449324 bp

Thymine Count

448770 bp

Guanine Count

736304 bp

Cytosine Count

738754 bp

Genome Length

2373152 bp

Protein-coding Genes

2311 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf445 domain-containing proteinD3M59_07360Not AvailableNegative1444291 - 144549343913.5
efflux rnd transporter permease subunitD3M59_07365Not AvailableNegative1445591 - 1448752113767.0
efflux rnd transporter periplasmic adaptor subunitD3M59_07370Not AvailableNegative1448785 - 144996340963.8
glsb/yeaq/ymge family stress response membrane proteinD3M59_07375Not AvailablePositive1450182 - 14504489194.92
simpl domain-containing proteinD3M59_07380Not AvailablePositive1450540 - 145126525520.6
glsb/yeaq/ymge family stress response membrane proteinD3M59_07385Not AvailableNegative1451358 - 14516309253.06
duf1153 domain-containing proteinD3M59_07390Not AvailableNegative1451818 - 145211711323.7
hypothetical proteinD3M59_07395Not AvailableNegative1452214 - 14524418212.59
trna 2-thiouridine(34) synthase mnmaD3M59_07400Not AvailablePositive1452517 - 145362940278.0
alpha/beta fold hydrolaseD3M59_07405Not AvailablePositive1453646 - 145473140377.6

Displaying genes 1461 – 1470 of 2362 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.